Thinking Through Signs: PEEL as a Semiotic Scaffolding for Epistemically Accountable AI-Enabled Research Researchers have introduced PEEL (Protocols for Epistemically Engaged Literacy in AI), a semiotic scaffolding framework that combines deterministic distant reading with LLM interpretation to address epistemic accountability in AI-enabled research. Applied to AI-generated condensations of three source texts, PEEL revealed systematic distortions in quantity, term frequency, and epistemic voice that remain invisible without non-AI measurement tools. The framework yields three design implications: deterministic instruments must accompany AI tools, fluency does not equal fidelity, and epistemic authority must be designed into research systems rather than assumed. Computer Science Artificial Intelligence Submitted on 2 Jun 2026 Title:Thinking Through Signs: PEEL as a Semiotic Scaffolding for Epistemically Accountable AI-Enabled Research View PDF /pdf/2606.04152 Abstract:Large language models are reshaping research practice while quietly eroding researchers epistemic accountability. This commentary introduces PEEL - Protocols for Epistemically Engaged Literacy in AI, a working scaffolding that combines deterministic distant reading via Voyant Tools with LLM interpretation via Claude, grounded in Peircean semiotics and abductive reasoning. Applied to AI-generated condensations of three source texts, PEEL reveals systematic distortions in quantity, term frequency, and epistemic voice that are invisible without non-AI measurement -- and yields three design implications: deterministic instruments must accompany AI tools; fluency is not fidelity; epistemic authority must be designed in, not assumed. Submission history From: Juliana Ferreira J view email /show-email/e703b72b/2606.04152 v1 Tue, 2 Jun 2026 19:19:52 UTC 1,821 KB References & Citations Loading... Bibliographic and Citation Tools Bibliographic Explorer What is the Explorer? https://info.arxiv.org/labs/showcase.html arxiv-bibliographic-explorer Connected Papers What is Connected Papers? https://www.connectedpapers.com/about Litmaps What is Litmaps? https://www.litmaps.co/ scite Smart Citations What are Smart Citations? https://www.scite.ai/ Code, Data and Media Associated with this Article alphaXiv What is alphaXiv? https://alphaxiv.org/ CatalyzeX Code Finder for Papers What is CatalyzeX? https://www.catalyzex.com DagsHub What is DagsHub? https://dagshub.com/ Gotit.pub What is GotitPub? http://gotit.pub/faq Hugging Face What is Huggingface? https://huggingface.co/huggingface ScienceCast What is ScienceCast? https://sciencecast.org/welcome Demos Recommenders and Search Tools Influence Flower What are Influence Flowers? https://influencemap.cmlab.dev/ CORE Recommender What is CORE? https://core.ac.uk/services/recommender arXivLabs: experimental projects with community collaborators arXivLabs is a framework that allows collaborators to develop and share new arXiv features directly on our website. Both individuals and organizations that work with arXivLabs have embraced and accepted our values of openness, community, excellence, and user data privacy. arXiv is committed to these values and only works with partners that adhere to them. Have an idea for a project that will add value for arXiv's community? Learn more about arXivLabs https://info.arxiv.org/labs/index.html .