Feature Reconfiguration With Visual Prior for Medical Lesion Segmentation

arXiv:2609.03535v1 Announce Type: new Abstract: Lesion segmentation in medical images plays a critical role in clinical diagnosis and treatment planning. Despite significant advances, lesion segmentation remains challenging due to two major factors: (1) complex background interference; (2) diverse lesion morphology. Existing encoder-decoder based methods mainly focus on enhancing feature extraction or redesigning decoding strategies. However, they lack early prior guidance and feature reconfiguration during the encoding stage, limiting their effectiveness in handling these challenges. To address these limitations, we propose FreNet, a feature reconfiguration framework with visual priors, which performs pixel-level reconfiguration before encoding and feature-level reconfiguration during encoding for precise medical lesion segmentation. To suppress background responses, we propose an Implicit Prior Neural Network (IPNN), which models a continuous spatial field and leverages visual prior from SAM to reconfigure input image before encoding stage. To better handle diverse lesion morphology, we design a Dual-domain Feature Reconfiguration (DFR) module to progressively reconfigure backbone features during encoding stage. Within DFR, the Frequency Decoupling Module (FDM) decouples backbone features in frequency domain to enhance foreground-background discriminability, while the Spatial Localization Module (SLM) spatially relocates and improving spatial stability after frequency decoupling. Extensive experiments on 9 medical image segmentation benchmarks across three imaging modalities demonstrate that FreNet significantly outperforms state-of-the-art (SOTA) methods. On the challenging ETIS dataset, our method achieves Dice improvements of 5.0% over SOTA method and 7.2% over SAM.