BDIP-Net: Dual-Interaction Graph Learning for Property Prediction of Bilayer Materials Researchers propose BDIP-Net, a graph neural network that explicitly models intra-layer and inter-layer interactions for property prediction of bilayer materials, outperforming existing approaches on the BiDB, HetDB, and SAMBA datasets. The framework also uses a MatterSim-D3-based workflow to generate DFT-quality bilayer structures at reduced computational cost. arXiv:2608.14640v1 Announce Type: new Abstract: Stacked bilayer materials exhibit rich stacking-dependent properties driven by the interplay between strong intra-layer bonding and weak inter-layer van der Waals interactions. The computational discovery of such materials is challenging because accurate structure generation typically relies on expensive DFT-based optimization, while existing machine-learning models often fail to explicitly distinguish different interaction types during property prediction. To address these challenges, we propose a machine-learning framework for efficient construction and property prediction of stacked bilayer materials. The framework employs a MatterSim-D3-based structural optimization workflow to generate DFT-quality bilayer structures from monolayer building blocks and stacking configurations at substantially reduced computational cost. For property prediction, we introduce BDIP-Net Bilayer Dual-Interaction Potential Network , a graph neural network that explicitly models intra-layer and inter-layer interactions through interaction-specific potential representations and adaptive message fusion. We evaluate the proposed framework on BiDB, HetDB, and SAMBA, encompassing homobilayers, heterobilayers, and twisted bilayer systems. Results show that the MatterSim-D3-based workflow closely reproduces DFT-PBE-D3 optimized structures, while BDIP-Net consistently outperforms existing graph neural network and potential-based approaches for bilayer property prediction.