Automatic Differentiation from Scratch: How PyTorch Computes Gradients in Physics-Informed Neural Networks A new arXiv paper traces how PyTorch's automatic differentiation engine computes gradients for Physics-Informed Neural Networks, detailing the two-level differentiation process and verifying results against hand derivations. arXiv:2607.13042v1 Announce Type: new Abstract: This paper traces, with explicit numerical values, how PyTorch's automatic differentiation AD engine computes gradients for Physics-Informed Neural Network PINN training -- a setting that requires two levels of differentiation: computing the physics derivative $\hat{y}' t =d\hat{y}/dt$ through the network, and computing parameter gradients $\nabla \theta L$ of a loss that itself depends on $\hat{y}' t $. Using a 1-3-3-1 multilayer perceptron and the initial value problem $y' t +y t =0$, $y 0 =1$, we trace the complete pipeline at every node: the computational graph built during the forward pass, the reverse-mode backward traversal that computes all 22 parameter gradients in a single pass, and the graph-on-graph mechanism by which \texttt{create\ graph=True} enables correct differentiation through the physics-informed residual. Every adjoint value is verified against the hand derivations of Tahimi 2026 , connecting the $P/Q$ sensitivity framework to the vector--Jacobian products used by PyTorch's autograd engine.